Islet Gene Expression

• Gaulton Lab islet genomics http://www.gaultonlab.org/pages/Islet_expression_HPAP.html
• Single cell RNA-seq data in purified islets from 65 donors in HPAP http://www.tools.cmdga.org:3838/islet-hpap-browser/
• Sandberg lab single-cell gene expression atlas of human pancreatic islets in health and type 2 diabetes https://sandberglab.se/tool/pancreas
• Huising Lab Integrated Human scRNA-Seq Studies https://huisinglab.com/diabetes_2019/index.html
• Tabular Sapiens https://tabula-sapiens-portal.ds.czbiohub.org/
• Human Protein Atlas https://www.proteinatlas.org/
• Tabular Muris https://tabula-muris.ds.czbiohub.org/

Hydrogels

• Appel Lab, Calculator for solute diffusion in hydrogels http://www.supramolecularbiomaterials.com/msdm-calculator
• Appel Lab, Calculator for hydrogel extrudability http://www.supramolecularbiomaterials.com/extrudability
• Peppas and Peyton Labs, Hydrogel Design Tools https://hydrogeldesign.com/

Statistics

• G*power, tool to compute statistical power analyses https://www.psychologie.hhu.de/arbeitsgruppen/allgemeine-psychologie-und-arbeitspsychologie/gpower
• Appel Lab Power Calculation http://www.supramolecularbiomaterials.com/study-power

Imaging/Cytometry

• FPbase https://www.fpbase.org/
• FluoroFinder https://fluorofinder.com/
• OMIPs https://medicine.uiowa.edu/flowcytometry/resources/omips-optimized-panels
• Leica SP8 tutorial https://www.epfl.ch/research/facilities/ptbiop/equipment/leica-sp8-in1/
• ImageJ NeuroCyto Lab update site https://forum.image.sc/t/neurocyto-luts-update-site/26244
• ImageJ update sites how to https://imagej.net/update-sites/
• add the NeuroCyto Lab Update sites to your ImageJ for LUTs and great tools
• Stardist – segmentation for ImageJ https://imagej.net/plugins/stardist
• Cellpose – segmentation for ImageJ https://cellpose.readthedocs.io/en/latest/
• Trackmate with cellpose https://imagej.net/plugins/trackmate/detectors/trackmate-cellpose

Data visualization

• PlotsofData https://huygens.science.uva.nl/PlotsOfData/
• Superplots https://rupress.org/jcb/article/219/6/e202001064/151717/SuperPlots-Communicating-reproducibility-and
• Superplots https://huygens.science.uva.nl/SuperPlotsOfData/
• Superplots https://www.molbiolcell.org/doi/10.1091/mbc.E20-09-0583
• Data visualization course https://datavizf24.classes.andrewheiss.com/
• Data visualization course https://joachimgoedhart.github.io/DataViz-protocols/
• Open microscopy resources https://github.com/HohlbeinLab/OpenMicroscopy?tab=readme-ov-file

Scientific Writing

• Broad Institute Journal Abstract https://mitcommlab.mit.edu/broad/commkit/journal-article-abstract/
• Southern Fried Science how to write a good abstract https://www.southernfriedscience.com/distracted-by-abstracts-tips-for-writing-a-good-abstract-for-a-scientific-conference/
• Nature, how to construct a Nature summary paragraph https://www.nature.com/documents/nature-summary-paragraph.pdf
• Bioicons https://bioicons.com/
• NIH BioArt https://bioart.niaid.nih.gov/

Data Forensics

• Forensically https://29a.ch/photo-forensics
• Plot Digitizer https://plotdigitizer.com/
• Plot Digitizer https://apps.automeris.io/wpd/

Video compression/conversion

• Compress your microscopy videos for PPT pres. with handbrake software https://handbrake.fr/

Molecular Interactions

• How to measure and evaluate binding affinities https://elifesciences.org/articles/57264

Figure design

• Nature guide on Building Figure Panels https://research-figure-guide.nature.com/figures/building-and-exporting-figure-panels/
• Nature guide on Figure Specifications https://research-figure-guide.nature.com/figures/preparing-figures-our-specifications/
• Nature guide to Figure Design https://www.nature.com/documents/natrev-artworkguide_PS.pdf
• Guide to designing more effective figures https://bioinformatics-core-shared-training.github.io/effective-figure-design/DesigningEffectiveScientificFigures_Zabala_afternoon_v00.pdf
• Colorblind Friendly palettes https://thenode.biologists.com/data-visualization-with-flying-colors/research/
• How to create figure-ready images https://b.nanes.org/figures/index.html